1.    Sun, S. E., Li, Q., Kong, L. F., & Yu, H. (2016). Complete mitochondrial genomes of Trisidos kiyoni and Potiarca pilula: Varied mitochondrial genome size and highly rearranged gene order in Arcidae. Scientific Reports, 6. 33794. doi:10.1038/srep33794

2.    Sun, S. E., Li, Q., Kong, L. F., Yu, H., Zheng, X. D., Yu, R. H., Lin, J. P. (2016). DNA barcoding reveal patterns of species diversity among northwestern Pacific molluscs. Scientific Reports, 6, 33367. doi:10.1038/srep33367

3.     Yu, H., Zhao, X. L., & Li, Q. (2016). Genome-wide identification and characterization of long intergenic noncoding RNAs and their potential association with larval development in the Pacific oyster. Scientific Reports, 6. doi:10.1038/srep20796

4.      Zhao, X. L., Yu, H., Kong, L. F., Liu, S. K., & Li, Q. (2016). High throughput sequencing of small RNAs transcriptomes in two Crassostrea oysters identifies microRNAs involved in osmotic stress response. Scientific Reports, 6, 22687. doi:10.1038/srep22687

5.      Zhao, X. L., Yu, H., Kong, L. F., & Li, Q. (2016). Gene Co-Expression Network Analysis Reveals the Correlation Patterns Among Genes in Euryhaline Adaptation of Crassostrea gigas. Marine Biotechnology, 18(5), 535-544. doi:10.1007/s10126-016-9715-7

6.    Zhong, X. X., Feng, D. D., Yu, H., Kong, L. F., & Li, Q. (2016). Genetic Variation and Breeding Signature in Mass Selection Lines of the Pacific Oyster (Crassostrea gigas) Assessed by SNP Markers. Plos One, 11(3). doi:10.1371/journal.pone.0150868

7.      Zou, S. M., & Li, Q. (2016). Pay Attention to the Overlooked Cryptic Diversity in Existing Barcoding Data: the Case of Mollusca with Character-Based DNA Barcoding. Marine Biotechnology, 18(3), 327-335. doi:10.1007/s10126-016-9692-x

8.      Jiang, Q., Li, Q., Yu, H., & Kong, L. F. (2016). Inheritance and Variation of Genomic DNA Methylation in Diploid and Triploid Pacific Oyster (Crassostrea gigas). Marine Biotechnology, 18(1), 124-132. doi:10.1007/s10126-015-9674-4

9.      Bi, J. H., Li, Q., Zhang, X. J., Zhang, Z. X., Tian, J. L., Xu, Y. S., & Liu, W. G. (2016). Seasonal Variation of Biochemical Components in Clam (Saxidomus purpuratus Sowerby 1852) in Relation to Its Reproductive Cycle and the Environmental Condition of Sanggou Bay, China. Journal of Ocean University of China, 15(2), 341-350. doi:10.1007/s11802-016-2855-6

10.  Bo, Q. K., Zheng, X. D., Gao, X. L., & Li, Q. (2016). Multiple paternity in the common long-armed octopus Octopus minor (Sasaki, 1920) (Cephalopoda: Octopoda) as revealed by microsatellite DNA analysis. Marine Ecology-an Evolutionary Perspective, 37(5), 1073-1078. doi:10.1111/maec.12364

11.  Dong, Y., Li, Q., Zhong, X. X., & Kong, L. F. (2016). Development of Gene-derived SNP Markers and Their Application for the Assessment of Genetic Diversity in Wild and Cultured Populations in Sea Cucumber, Apostichopus japonicus. Journal of the World Aquaculture Society, 47(6), 873-888. doi:10.1111/jwas.12334

12. Gao, X. L., Zheng, X. D., Bo, Q. K., & Li, Q. (2016). Population genetics of the common long-armed octopus Octopus minor (Sasaki, 1920) (Cephalopoda: Octopoda) in Chinese waters based on microsatellite analysis. Biochemical Systematics and Ecology, 66, 129-136. doi:10.1016/j.bse.2016.03.014

13.Guo, X., Li, Q., Kong, L. F., & Yu, H. (2016). Linkage Disequilibrium in Wild and Cultured Populations of Pacific Oyster (Crassostrea gigas). Journal of Ocean University of China, 15(2), 327-333. doi:10.1007/s11802-016-2832-0

14. Li, H. H., Kong, L. F., Yu, R. H., & Li, Q. (2016). Characterization, expression, and functional analysis of testis-specific serine/threonine kinase 1 (Tssk1) in the pen shell Atrina pectinata. Invertebrate Reproduction & Development, 60(2), 118-125. doi:10.1080/07924259.2016.1161667

15.  Li, N., Li, Q., Kong, L. F., & Yu, H. (2016). Development of Three Multiplex PCR Primer Sets for Ark Shell (Scapharca broughtonii) and Their Validation in Parentage Assignment. Journal of Ocean University of China, 15(2), 311-317. doi:10.1007/s11802-016-2777-3

16. Li, Q., Qi, M. J., Nie, H. T., Kong, L. F., & Yu, H. (2016). Microsatellite-centromere mapping in Japanese scallop (Patinopecten yessoensis) through half-tetrad analysis in gynogenetic diploid families. Journal of Ocean University of China, 15(3), 541-548. doi:10.1007/s11802-016-2904-1

17.  Lin, J., Kong, L., & Li, Q. (2016). DNA barcoding of true limpets （Order Patellogastropoda) along coast of China: a case study. Mitochondrial DNA Part A, 27(4), 2310-2314. doi:10.3109/19401736.2015.1022758

18. Ma, Y. Y., Zheng, X. D., Cheng, R. B., & Li, Q. (2016). The complete mitochondrial genome of Octopus conispadiceus (Sasaki, 1917) (Cephalopoda: Octopodidae). Mitochondrial DNA, 27(2), 1058-1059. doi:10.3109/19401736.2014.928866

19.  Qian, Y. S., Zheng, X. D., Wang, W. J., Yang, J. M., & Li, Q. (2016). Ultrastructure of spermatozoa and spermatogenesis in Octopus minor (Sasaki, 1920) (Cephalopoda: Octopoda). Journal of Natural History, 50(31-32), 2037-2047. doi:10.1080/00222933.2016.1184343

20.  Song, J. L., Li, Q., Kong, L. F., & Yu, H. (2016). Identification of candidate AFLP markers for shell color of the Pacific oyster (Crassostrea gigas) under artificial selection. Biochemical Systematics and Ecology, 66, 209-215. doi:10.1016/j.bse.2016.04.012

21.Wang, X. B., Li, Q., Yu, H., & Kong, L. F. (2016). Genetic variation assessed with microsatellites in mass selection lines of the Pacific oyster (Crassostrea gigas) in China. Journal of Ocean University of China, 15(6), 1039-1045. doi:10.1007/s11802-016-3056-z

22.  Yu, H., Kong, L. F., & Li, Q. (2016). Complete mitochondrial genome of Ostrea denselamellosa (Bivalvia, Ostreidae). Mitochondrial DNA, 27(1), 711-712. doi:10.3109/19401736.2014.913154

23.  Yu, H., Kong, L. F., & Li, Q. (2016). Evaluation of the efficacy of twelve mitochondrial protein-coding genes as barcodes for mollusk DNA barcoding. Mitochondrial DNA, 27(2), 1336-1339. doi:10.3109/19401736.2014.945579

24. Yu, Z. Z., Li, Q., & Kong, L. F. (2016). New insight into the phylogeny of Sinonovacula (Bivalvia: Solecurtidae) revealed by comprehensive DNA barcoding analyses of two mitochondrial genes. Mitochondrial DNA, 27(2), 1554-1557. doi:10.3109/19401736.2014.953135

25.  马培振, 郑小东, 于瑞海, 王昭萍, 枪鱿科和蛸科头足类齿舌的比较研究[J]. 中国海洋大学学报(自然科学版), 2016, 46(5): 32-37.

26.  郭园园, 田传远, 蒋涛, 李琪, 何旭东. 2016. 刺参幼参麻醉研究[J]. 中国海洋大学学报(自然科学版), 2016, 46(10 Sup.), 41-45.

27.  高霄龙, 李莉, 孔令锋, 李琪. 养殖密度对毛蚶幼虫生长及存活的影响[J]. 中国水产科学, 2016, 01: 233-240.

28.  余勇, 李琪, 于红, 孔令锋, 于瑞海. 长牡蛎中国群体和日本群体杂交子代的杂种优势分析[J]. 中国海洋大学学报(自然科学版), 2016, 02: 35-41.

29.  葛建龙, 李琪, 于红, 孔令锋. 长牡蛎壳金选育群体生长性状的选择效应[J]. 水产学报, 2016, 04: 612-617.

30.  于红, 孙晓琪, 于瑞海, 李琪. 脉红螺交配后的性选择机制[J]. 水产学报, 2016, 06: 911-916.

31.  董玉, 李琪. 刺参SNP标记与生长性状的关联分析[J]. 海洋湖沼通报, 2016, 02: 49-58.

32.  邓传敏, 李琪, 孔令锋, 于瑞海, 于红. 长牡蛎壳金选育系F4与普通养殖群体摄食和呼吸的比较研究[J]. 中国水产科学, 2016, 04: 855-863.

33.  陈辰, 李琪, 孔令锋, 于红. 多元PCR技术在毛蚶家系鉴定中的应用[J]. 中国海洋大学学报(自然科学版), 2016, 09: 18-23.

34.  王昌勃, 李琪, 于瑞海, 孔令锋, 于红. 栉江珧wnt4基因cDNA的克隆表达及调控[J]. 中国水产科学, 2016, 05: 1041-1051.

35.  王许波, 李琪, 孔令锋, 于瑞海, 于红. 长牡蛎壳黑和壳白选育群体生长性状的选择效应[J]. 中国水产科学, 2016, 05: 1099-1107.

36.  杨智鹏, 于红, 于瑞海, 孔令锋, 李琪. 脉红螺附着变态与食性转换的研究[J]. 水产学报, 2016, 09: 1472-1478.

37.  徐成勋, 李琪, 张景晓, 孔令锋. 近交对壳金长牡蛎(Crassostrea gigas)幼虫期与稚贝期生长和存活的影响[J]. 海洋与湖沼, 2016, 05: 977-981.

38.  于洋, 李伟, 王许波, 张景晓, 李琪. 熊本牡蛎室内人工育苗技术研究[J]. 海洋湖沼通报, 2016, 05: 104-108.

39.  王昌勃, 李琪, 孔令锋,于瑞海. 熊本牡蛎单体苗种生产技术研究[J]. 中国海洋大学学报(自然科学版), 2016, 11: 136-142+186.

40.  王雪磊, 李琪, 孔令锋, 于红, 于瑞海. 壳金长牡蛎自交和杂交家系生长与存活比较[J]. 中国水产科学, 2016, 06: 1358-1367.

41.  蒋涛, 田传远, 李琪, 孔令锋, 郭园园. 水产养殖综合效益评价指标体系研究[J]. 中国渔业经济, 2016, 04: 77-83.

42.  王雪磊, 李琪, 孔令锋, 于瑞海, 于红. 壳金长牡蛎家系的建立及生长和存活性状的比较[J]. 水产学报, 2016, 11: 1683-1693.

43.  王雪磊, 李琪, 于红, 孔令锋. 长牡蛎壳金性状遗传参数评估及与生长性状的关联分析[J]. 水产学报, 2016, 12: 1889-1896.

著作：

1.    于瑞海李琪主编. 2016. 我国海产经济贝类苗种生产技术. 中国海洋大学出版社, 青岛.

专利

1.      刘兆胜, 郑小东，王寿鹏，李钢，王怀忠. 一种真蛸浅海养成用的网箱实用新型。ZL201620012334.5. 申请日：2016-01-07，授权日：2016-10-26.

2.      于瑞海, 张哲, 李琪, 王昭萍, 田传远, 马培振. 一种高档牡蛎养殖装置. 实用新型. ZL 201620091833.8, 授权日：2016.08.31

计算机软件著作权

1.    田传远，李琪，刘长东，孔令锋，蒋涛，郭园园，李龙，黄六一. 池塘养殖综合效益评价系统（V1.0）. 2016SR183164, 中国海洋大学, 2016年7月15日