4. Sun, X.J. and Q. Li (2013): The Effect of food availability on development and phenotypic plasticity in larvae of the sea cucumber (Apostichopus japonicus)Invertebrate Reproduction and Development, 57:255-263.
5. Ke, Q.Z. and Q. Li (2013): Annual dynamics of glycogen, lipids and proteins during the reproductive cycle of the surf clam Mactra veneriformis from the north coast of Shandong Peninsular, China. Invertebrate Reproduction and Development, 57:49-60.
6. Cong, R.H., Li, Q. and L.F. Kong (2013): Polymorphism in the insulin-related peptide gene and its association with growth traits in the Pacific oyster Crassostrea gigas. Biochemical Systematics and Ecology, 46:36-43.
7. Mu, C.M and Q. Li (2013): Effects of the dinoflagellate Alexandrium catenella on early development of the Pacific oyster Crassostrea gigas. Journal of Shellfish Research, 32:689-694.
8. Yuan, Y., Kong, L.F. and Q. Li (2013): Mitogenome evidence for the existence of cryptic species in Coelomactra antiquata. Genes & Genomics, 35:693-701.
9. Zhong, X.X., Li, Q., Yu, H. and L.F. Kong (2013): Development and validation of single nucleotide polymorphism markers in the Pacific oyster Crassostrea gigas using high resolution melting analysis. Journal of the World Aquaculture Society, 44:455-465.
10. Li, R.H., Li, Q. and C.L. Wang (2013): Sibship reconstruction and effective population size estimation in mass spawning ark shell, Scapharca broughtonii based on microsatellite analysis. Genes & Genomics, 35:703-708.
11. Jiang, Q., Li, Q., Yu, H. and L.F. Kong (2013): Genetic and epigenetic variation in mass selection populations of Pacific oyster Crassostrea gigas. Genes & Genomics, 35:641-647.
12. Nie, H.T., Li, N., Kong, L.F. and Q. Li (2013): Isolation and characterization of 18 polymorphic microsatellite loci in the surf clam (Mactra veneriformis). Conservation Genetics Resources, 5:635-637.
13. An, J.T., Yu, H., Yu, R.H., Kong, L.F. and Q. Li (2013): Isolation and characterization of 23 microsatellite loci in the veined rapa whelk (Rapana venosa). Conservation Genetics Resources, 5: 1049-1051.
14. Gao, X.L., Zheng, X.D. and Q. Li (2013): Development and characterization of twelve polymorphic microsatellite loci in the cephalopod Amphioctopus fangsiao (d’Orbigny, 1839-1841). Conservation Genetics Resources, 5: 619-621.
15. Liu, X.Y., Kong, L.F., Yu, H. and Q. Li (2013): Isolation and characterization of 14 microsatellite loci in Macridiscus semicancellata (Koch in Philippi, 1843). Conservation Genetics Resources, 5: 397-399.
16. Su, X.J., Pan, Y., Zuo, Z.R., Kong, L.F. and Q. Li (2013): Isolation and characterization of microsatellite loci in the clam Lutraria sieboldii Reeve (Bivalvia: Veneroida). Conservation Genetics Resources, 5:223-225.
17. Liu, W.G., Li, Q. and L.F. Kong (2013): Reproductive cycle and seasonal variations in lipid content and fatty acid composition in gonad of the cockle Fulvia mutica in relation to temperature and food. Journal of Ocean University of China, 12:427-433.
18. 远洋, 李琪, 孔令锋, 2013: 大竹蛏和长竹蛏线粒体基因组的比较研究. 中国海洋大学学报, 43:33-38.
19. 宋盛亮, 李琪, 孔令锋, 于红, 2013: 长牡蛎生长性状的遗传效应及与环境互作分析. 中国海洋大学学报, 43:41-47.
20. 朱厚祥, 孔令锋, 李琪, 王有廷, 赵强, 2013: 盐度、温度和培育密度对白刺参幼虫生长及存活影响. 中国海洋大学学报, 43:34-39.
21. 郭香, 李琪, 孔令锋, 于红, 2013: 基于微卫星标记整合长牡蛎遗传图谱. 水产学报, 37:823-829.
22. 王庆志, 李琪, 孔令锋, 于瑞海, 2013: 长牡蛎第三代选育群体生长性状的选择效应. 水产学报, 37:1487-1494.
23. 陈军, 李琪, 孔令锋, 2013: 分子系统学研究进展. 生命科学, 25:518-523.
24. 陈辰, 李琪, 慕翠敏, 孔令锋, 2013: 乳山牡蛎养殖海域水质状况季节分析与评价. 海洋湖沼通报, 1:38-44.
25. 刘思玮, 李琪, 于红, 孔令锋, 2013: 长牡蛎糖原磷酸化酶基因SNPs与生长性状和糖原含量的相关性分析. 中国水产科学, 20:481-489.
26. 聂鸿涛, 李琪, 孔令锋, 2013: 皱纹盘鲍微卫星多重PCR体系构建及其在家系鉴定中的应用. 水产学报, 37:207-215.
27. 潘英, 慕翠敏, 李琪, 苏翔驹, 区小玲, 何俊锋, 吴雪萍, 陈德金, 2013: 管角螺遗传多样性的AFLP分析. 中国海洋大学学报, 43:58-62.
28. 刘明坤, 王昌勃, 孔令锋, 李琪, 2013: 象拔蚌人工育苗技术研究. 海洋科学, 37:103-106.
29. 高霄龙, 李莉, 邱兆星, 孔令锋, 郑永允, 李琪, 2013: 不同附着基对毛蚶（Scapharca subcrenata）幼虫附着变态影响的研究. 海洋科学, 61-66.
30. 孔令锋, 滕爽爽, 李琪, 2013: 长牡蛎中国群体与日本群体杂交子一代的生长和存活比较海洋科学. 海洋科学, 78-83.